i3assist.Transform

class i3assist.Transform(transform_line)

A single particle transform in new I3.

For more information refer to the subvolume tutorial document for I3.

Parameters:transformLine (str) – A string with the transform data.

__init__(transform_line)

Methods

__init__(transform_line)
add_rotation(rotation[, inplace])	Adds a rotation in addition to particles current orientation.
add_shift([shift_x, shift_y, shift_z, inplace])	Adjusts the particles defined center by an arbitrary vector.
copy()	Returns a copy of the transform.
scale(scale_factor[, inplace])	Scale the transform to handle binning.
to_pos()	Return the equivalent old I3 position.

Attributes

class_number	int Class number that the particle belongs to.
coordinates	list of int Particles integer coordinates in tomogram.
rotation	i3assist.RotationMatrix Particles rotation matrix to orient.
score	float Correlation score of particle alignment to reference.
shifts	list of float Particle displacements from coordinates.
subset	str Subset identifier for particle.